#!/bin/bash

## remove all previously generated files
./clean -f
#./clean

## make an archive from the sources
./dobackup


if [ ! -e genesis ]; then
  ln -s ../src/genesis .
fi
if [ ! -e rescal ]; then
  ln -s ../src/rescal .
fi

## parameters file (input)
PAR_FILE="dun_bench.par"

## general log files (output)
GENESIS_LOG_FILE="GENESIS.log"
RESCAL_LOG_FILE="RESCAL.log"

### number of OpenMP threads
export OMP_NUM_THREADS=2
echo OMP_NUM_THREADS=$OMP_NUM_THREADS

## generation of a custom cellular space 
#./genesis -f $PAR_FILE -s 2000 > $GENESIS_LOG_FILE

## run rescal with GUI and save png images with delay in t0 unit
(time ./rescal $PAR_FILE -cv0 -lc -ls 45 -vel -dlog 1000t0 -dpng 100t0 -dcsp 1000t0 -fr 15 -stoptime 5000t0 >> $RESCAL_LOG_FILE ) 2> time.out

## run rescal without GUI (no window) and save png images with delay in t0 unit
#(time ./rescal $PAR_FILE -cv0 -lc -ls 45 -vel -dlog 1000t0 -dpng 100t0 -dcsp 1000t0 -nv -stoptime 5000t0 >> $RESCAL_LOG_FILE ) 2> time.out

## plot probability function between shear stress and erosion
#./plot_cgv

